A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2022-12-12, 16:24 +07
based on data in:
/home/blacksheeperoot/Work/Dev/nadiatools_tutorial/results_2/AlevinFry
General Statistics
Showing 1/1 rows and 6/6 columns.| Sample Name | Estimated Number of Cells | Mean Reads per Cell | Mean UMI per Cell | Mean Gene per Cell | Number of Corrected Reads in Cells | Percentage of Mapped reads in Cells |
|---|---|---|---|---|---|---|
| HEK_3T3 | 2502.0 | 7772.0 | 2956.0 | 1915.0 | 34699155.0 | 56.0 |
Alevin-fry
Alevin-fry Alevin-fry unlocks rapid, accurate and memory-frugal quantification of single-cell RNA-seq data.DOI: 10.1038/s41592-022-01408-3.
Mapping Metrics
Mapping metrics
| Sample Name | Number of Corrected Reads in Cells | Percentage of Mapped reads in Cells | Mean Deduplicated Rate | Mean by max | Mean Gene Over Mean per Cell |
|---|---|---|---|---|---|
| HEK_3T3 | 34699155.0 | 56.0 | 0.4 | 0.1 | 391.0 |
Cell Metrics
Cell metrics
| Sample Name | Estimated Number of Cells | Number of Mapped Reads in Cells | Mean Reads per Cell | Median Reads per Cell | Number of UMI in Cells | Mean UMI per Cell | Median UMI per Cell | Mean Gene per Cell | Median Gene per Cell |
|---|---|---|---|---|---|---|---|---|---|
| HEK_3T3 | 2502.0 | 19444582.0 | 7772.0 | 4812.0 | 7395369.0 | 2956.0 | 2114.0 | 1915.0 | 1562.0 |
Violin plot
Highest Expressed Genes
Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).