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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.13

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2022-12-12, 16:24 +07 based on data in: /home/blacksheeperoot/Work/Dev/nadiatools_tutorial/results_2/AlevinFry

        General Statistics

        Showing 1/1 rows and 6/6 columns.
        Sample NameEstimated Number of CellsMean Reads per CellMean UMI per CellMean Gene per CellNumber of Corrected Reads in CellsPercentage of Mapped reads in Cells
        HEK_3T3
        2502.0
        7772.0
        2956.0
        1915.0
        34699155.0
        56.0

        Alevin-fry

        Alevin-fry Alevin-fry unlocks rapid, accurate and memory-frugal quantification of single-cell RNA-seq data.DOI: 10.1038/s41592-022-01408-3.

        Mapping Metrics

        Mapping metrics

        Showing 1/1 rows and 5/5 columns.
        Sample NameNumber of Corrected Reads in CellsPercentage of Mapped reads in CellsMean Deduplicated RateMean by maxMean Gene Over Mean per Cell
        HEK_3T3
        34699155.0
        56.0
        0.4
        0.1
        391.0

        Cell Metrics

        Cell metrics

        Showing 1/1 rows and 9/9 columns.
        Sample NameEstimated Number of CellsNumber of Mapped Reads in CellsMean Reads per CellMedian Reads per CellNumber of UMI in CellsMean UMI per CellMedian UMI per CellMean Gene per CellMedian Gene per Cell
        HEK_3T3
        2502.0
        19444582.0
        7772.0
        4812.0
        7395369.0
        2956.0
        2114.0
        1915.0
        1562.0

        Nadiatools

        Nadiatools #.DOI: #.

        Knee plot

        Violin plot

        Highest Expressed Genes

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

        MultiQC v1.13 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.